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Archive of open-archaeo, a list of open source archaeological software and resources.



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A Distant Reading of the Day of Archaeology A Distant Reading of the Day of Archaeology Introduction The Day of Archaeology is an event where archaeologists write about their acitivities on a group blog . The event started in 2011 and aims to 'provide a window into the daily lives of archaeologists from all over the world'. Currently there are over 1000 posts on the blog, rather a lot to read in one sitting. Rather than closely read each post, we can do a distant reading to get some insights...
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open-archaeo
by emanuelhuber
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Ground-penetrating radar (GPR) data processing and visualisation: a free and open-source software package (R language) RGPR : a free and open-source software package for ground-penetrating radar (GPR) data processing If you have any questions, comments or suggestions, feel free to contact me (in english, french or german): emanuel.huber@pm.me I am developing this package on my free time as a gift to the GPR community. Any support will be appreciated! RGPR is a free and open-source software...
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CRAN Task View: Archaeological Science CRAN Task View: Archaeological Science Maintainer: Ben Marwick Contact: benmarwick at gmail.com Version: 2020-12-26 This CRAN Task View contains a list of packages useful for scientific work in Archaeology, grouped by topic. Note that this is not an official CRAN Task View, just one I have prepared for my own convenience, so it includes some packages only on GitHub and other non-CRAN resources I find useful. Many of the most highly recommended packages...
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R library to generate 'Cumulative Percent Decay' curves for microbial taxonomic profiles cuperdec R package to generate 'Cumulative Percent Decay' curves, with optional filtering functions, for microbial taxonomic profiles. These curves aim to represent the level of 'endogenous' content of microbiome samples, such as ancient dental calculus, to help to identify samples with lowlevels of preservation that should be discarded for downstream analysis. Installation cuperdec is on CRAN. You can...
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R Interface to IntChron rintchron: R interface to IntChron rintchron provides an R interface to IntChron , an indexing service and exchangeformat for radiocarbon dates and other chronological data ( Bronk Ramseyet al. 2019 ). It includes a userfriendly interface for querying databases indexed by IntChron, as wellas lower level functions for interacting directly with the IntChronAPI . For an introduction to querying IntChron’s databases see the basicusage vignette . Foradvanced users, low...
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The GigaMesh Software Framework is a modular software for display, editing and visualization of 3D-data typically acquired with structured light scanning (SLS) or structure from motion (SfM). NAME GigaMesh - GigaMesh Software Framework for processing large meshes. DESCRIPTION The GigaMesh Software Framework is a modular software for display, editing and visualization of 3D-data typically acquired with structured light scanning (SLS) or structure from motion (SfM). It provides numerous functions...
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None Senscape Senscape is a toolbox for modelling human perception of topography for QGIS, based on QGIS viewshed module . It is a subclass of QGIS processing framework and can be readily used in custom models or scripts. The plugin is in experimental phase. To install: 1. Search for “Senscape” in QGIS plugin manager (make sure experimental plugins are allowed)2. In Processing menu, under Options, allow Senscape provider For manual instalation see QGIS viewshed module . Files should be...
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Peer reviewed and indexed articles published on Caddo archaeology since 2000. caddonet Peer reviewed and indexed articles published on Caddo archaeology since 2000. To restore the repository download the bundle wget https://archive.org/download/github.com-aksel-blaise-caddonet_-_2020-04-03_11-10-46/aksel-blaise-caddonet_-_2020-04-03_11-10-46.bundle and run: git clone aksel-blaise-caddonet_-_2020-04-03_11-10-46.bundle Source: https://github.com/aksel-blaise/caddonet Uploader: aksel-blaise Upload...
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Shiny app to analyse Al2O3:C measurements Al 2 O 3 :C Analysis App The 'Al2O3:C Analysis App' is a Shiny application providing an exhanced graphical user interface to the function analyse_Al2O3C_Measurement() from the R package 'Luminescence' . Impressions Installation and usage Requirements This app needs the R package 'Luminescence' in version 0.9.0 or newer. Installation The application can be either run local through RStudio or on a local device or an external Shiny Server . License This...
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Total Station Online-Surveying with QGIS Dependencies: Tachy2GIS 3D-Viewer requires vtk to run. If you don't have it already (test this by typing import vtk in a python console), see Installation . Alternatively you can use pipenv to handle the dependencies for you, see the section Developer Notes further down for more info on this. You need at least QGIS version 3.10.7. This is because there are issues in previous versions when creating geometry from Well-known text. Your Total Stations Data...
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R package for clean radiocarbon data cleanc14 cleanc14 provides some utility functions for cleaning radiocarbon data in R. Installation You can install the development version of cleanc14 using the remotes package: rremotes::install_github("joeroe/cleanc14") To restore the repository download the bundle wget https://archive.org/download/github.com-joeroe-cleanc14_-_2021-05-04_08-45-08/joeroe-cleanc14_-_2021-05-04_08-45-08.bundle and run: git clone...
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Ancient DNA Read Simulator for Metagenomic Introduction ADRSM (Ancient DNA Read Simulator for Metagenomics) is a tool designed to simulate the paired-end sequencing of a metagenomic community. ADRSM allows you to control precisely the amount of DNA from each organism in the community, which can be used, for example, to benchmark different metagenomics methods. Requirements Conda Installation conda install -c maxibor adrsm Usage adrsm ./data/short_genome_list.csv Output metagenome.{1,2}.fastq :...
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Bayesian tools for reconstructing past demography baydem The R package baydem (for bayESIAN demOGRAPHY) provides tools for reconstructing past and present demography. Installation There are three options for installing and using the package: (1) Install on an existing computer with necessary dependencies(2) Build a Docker image using the Dockerfile(3) Use a Docker image from Docker Hub Option 1: Install on an existing computer with necessary dependencies Details will vary based on the machine...
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None To restore the repository download the bundle wget https://archive.org/download/github.com-Chronomodel-chronomodel_-_2021-02-02_16-41-52/Chronomodel-chronomodel_-_2021-02-02_16-41-52.bundle and run: git clone Chronomodel-chronomodel_-_2021-02-02_16-41-52.bundle Source: https://github.com/Chronomodel/chronomodel Uploader: Chronomodel Upload date: 2021-02-02
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Climate Response and Virginia Archaeology: Maps from Different Points of View Climate Response and Virginia Archaeology: Maps from Different Points of View Jolene Smith, Virginia Department of Historic Resources A Paper for the 48th Annual Middle Atlantic Archaeology Conference in Virginia Beach, VA. March 17, 2018. In Geospatial Studies in Middle Atlantic ArchaeologySession Organizer: Yvonne French (Northern Virginia Chapter, Archeological Society of Virginia) Introduction: Expectations for...
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Learn Git and Contribute to Texas Archaeology Git-to-the-Point: Learn Git and Contribute to Texas Archaeology Contributors: Robert Z. Selden, Jr.; Juanita D. Garcia; and David Foxe Diagnostic artifacts comprise the basis for archaeological interpretations; however, as our taxonomic definitions evolve, artifacts that were previously assigned to a type generally retain that designation, potentially confounding future research efforts and interpretations. For this exercise, the original type...
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munsell colour system for R munsell The munsell package provides easy access to, and manipulation of, the Munsell colours. The munsell package provides a mapping between Munsell's original notation (e.g. "5R 5/10") and hexadecimal sRGB strings suitable for use directly in R graphics. The package also provides utilities to explore slices through the Munsell colour tree, to transform Munsell colours and display colour palettes. Munsell devised his system of colour notation to match the...
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This is a R-Project which uses transect data to define site sizes sitedefinition The goal of sitedefinition is to see, how feature densities might beused for site definition. To be published in “PraehistorischeZeitschrift” in 2019. Citation Please cite this compendium as: Authors, (2018). Title of compendium . Accessed 25 Jun 2018. Online at https://doi.org/xxx/xxx Installation You can install sitedefinition from github with: ``` r install.packages("devtools")...
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A python script to calculate the relative coverage of X and Y chromosomes, and their associated error bars, from the depth of coverage at specified SNPs. Sex.DetERRmine A python script to calculate the relative coverage of X and Y chromosomes, and their associated error bars, from the depth of coverage at specified SNPs. Mathematical equations added to README using this tool . Instructions The python script takes a modified output from samtools depth as input, via stdin. The samtools depth file...
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open-archaeo
by dirkseidensticker
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Archives des datations radiocarbone d'Afrique centrale aDRAC ( Archive des datations radiocarbones d’Afrique centrale ) Dirk Seidensticker & Wannes Hubau The archive for radiocarbon datings from Central Africa (aDRAC)provides a catalogue of available radiocarbon dates from Central Africa.The data cover published radiocarbon dates and essential metadata foreach date as well as available references. The data cover 1840 radiocarbon dates from 588 sites: Dates are available for the past up to...
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None SequenceTools This repository contains some programs that I use for processing sequencing data. Installation Simple Installation via stack and hackage This installation installs the latest version that is up on hackage : Download stack (https://docs.haskellstack.org/en/stable/README/#how-to-install). Run stack install sequenceTools --resolver nightly . You should now have the executables from this package under ~/.local/bin . Add ~/.local/bin to your PATH, for example by adding to your...
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library for reading files with x-y data from powder diffraction, spectroscopy, or other experimental methods To restore the repository download the bundle wget https://archive.org/download/github.com-wojdyr-xylib_-_2021-01-19_22-48-51/wojdyr-xylib_-_2021-01-19_22-48-51.bundle and run: git clone wojdyr-xylib_-_2021-01-19_22-48-51.bundle Source: https://github.com/wojdyr/xylib Uploader: wojdyr Upload date: 2021-01-19
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None kriging Codes for performing kriging for ethnographic and archaeological data. To restore the repository download the bundle wget https://archive.org/download/github.com-cl379-kriging_-_2015-05-04_10-58-32/cl379-kriging_-_2015-05-04_10-58-32.bundle and run: git clone cl379-kriging_-_2015-05-04_10-58-32.bundle Source: https://github.com/cl379/kriging Uploader: cl379 Upload date: 2015-05-04
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The Classical Language Toolkit To restore the repository download the bundle wget https://archive.org/download/github.com-cltk-cltk_-_2021-07-03_17-12-10/cltk-cltk_-_2021-07-03_17-12-10.bundle and run: git clone cltk-cltk_-_2021-07-03_17-12-10.bundle Source: https://github.com/cltk/cltk Uploader: cltk Upload date: 2021-07-03
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Detect and Parse Historic Dates in R unstruwwel Overview This R package provides means to detect and parse historic dates, e.g.,to ISO 8601:2-2019. It automatically converts language-specific verbalinformation, e.g., “circa 1st half of the 19th century,” into itsstandardized numerical counterparts, e.g., “1801-01-01\~/1850-12-31\~.”The package follows the recommendations of the MIDAS (MarburgerInformations-, Dokumentations- und Administrations-System), see, e.g.,...
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None ADMUR Ancient Demographic Modelling Using Radiocarbon Tools to directly model underlying population dynamics using chronological datasets (radiocarbon and other) with a variety of models, including Continuous Piecewise Linear (CPL) model framework. Optional taphonomy. Model comparison framework using BIC. Package also calibrates 14C samples, and generates Summed Probability Distributions (SPD). CPL modelling directly estimates the most likely population trajectory given a dataset, using...
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by adreinhard
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Colossal Cave Adventure digital palaeography and epigraphy project cca CCA Github ReadMeAndrew ReinhardJanuary 8, 2019 The files included in this repository and its subdirectories were either used or created by Andrew Reinhard in his Colossal Cave Adventure case study for the archaeology PhD at the University of York (UK). The goal of the case study was to determine if is possible to conduct stylometric and text analysis on game-code, and to see if any meaningful conclusions could be drawn from...
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R package for archaeological stratigraphy and chronological sequences stratigraphr stratigraphr is a tidy framework for working with archaeological stratigraphy and chronology in R.It includes tools for reading, analysing, and visualising stratigraphies (Harris matrices) and sequences as directed graphs;helper functions for using radiocarbon dates in a tidy data analysis; and an R interface to OxCal's Chronological Query Language (CQL). Installation You can install the development version of...
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A list of open source archaeological software and resources Open Archaeology Software & Resources A list of open source archaeological software and resources See ToDo.md for a list of tools or resources that are in demand, but which currently do not exist or need to be significantly improved. 3d-ceramics : 3d models of archaeological ceramics. by: sfsheath links: [ GitHub ] * tags: [3D modelling] A Mobile Data-Collection Workflow for Archaeologists : A list of tools and resource for data...
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R package 'RCarb' RCarb The R package 'RCarb' provides a collection of various R functionsto model dose rates in carbonate-rich samples. The package is atranslation of the 'MATLAB' program Carb by Roger P. Nathan. Installation of the developer version To install the latest development builds of 'RCarb' directly fromGitHub, run rif(!require("devtools")) install.packages("devtools")devtools::install_github("R-Lum/RCarb@master") To install a developer build other than...
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None epiPALEOMIX Pipeline Recently moved from BITBUCKET. A Fast, Accurate, and Automatic pipeline for generating nucleosome and methylation maps from high throughput sequencing data underlying ancient samples. Recent developments in ancient DNA research have shown that not only ancient genomes but ancient epigenomes can be recovered from high-throughput DNA sequence data. Although direct methods, such as bisulfite DNA treatment (Llamas et al. 2012) and target enrichment for methylated...
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An ancient DNA relatedness pipeline for ultra-low coverage whole genome shotgun data TKGWV2 An ancient DNA relatedness pipeline for ultra-low coverage whole genome shotgun data Description TKGWV2 is a pipeline to estimate biological relatedness (1st, 2nd, and unrelated degrees) between individuals specifically aimed at ultra-low coverage ancient DNA data obtained from whole genome sequencing.It is a massive update to the original TKrelated method published in 2017 (Fernandes et al.), with ease...
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A dataset of Roman amphitheaters. About 'roman-amphitheaters' is a digital resource that collects information about Roman amphitheaters with a primary goal being the easy use of its data in a wide variety of computational environments. It is designed to support open-ended inquiry into the place and role of amphitheaters in the Roman Empire. The file 'roman-amphitheaters.geojson' holds the latest information and is the source for other derived files, including 'roman-amphitheaters.csv' and the...
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by Landesamt-fuer-Archaeologie-Sachsen
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QGIS plugin for documentation of archaeological features using Tachy2GIS Tachy2GIS_arch QGIS plugin for documentation of archaeological features using Tachy2GIS Tachy2GIS arch (T2G arch) is a QGIS plugin that serves as application module for archaeological on-site documentation. It is designed to work with the forked Tachy2GIS plugin. T2g_arch aims to provide functions for an effective workflow with a focus on on-site documentation of geometries using a total station. The plugin is designed to...
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:hourglass: Analysis of Chronological Patterns from Archaeological Count Data kairos Overview A toolkit for absolute dating and analysis of chronological patterns.This package includes functions for chronological modeling and dating ofarchaeological assemblages from count data. It allows to compute timepoint estimates (e.g. Mean Ceramic Date) and density estimates of theoccupation and duration of an archaeological site. Initial development is in progress. Installation You can install the...
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Southwest Asian Palaeoarchaeology Data S outh w est A sian P alaeoarchaeology Data A collection of archaeological datasets and tools related to the prehistory of Southwest Asia. Installation You can install the development version of swapdata from GitHub using the remotes package : rremotes::install_github("joeroe/swapdata") To restore the repository download the bundle wget...
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An R package for the extraction, analysis and classification of (not only) archaeological objects from scanned images shapAAR This is an R package for the extraction, analysis and classification of (not only) archaeological objects derived from scanned images. Especially it aims at the analysis of the shapes/profiles of eg. ceramic vessels or arrow heads. Currently the extraction is implemented using active contour to identify and extract the shape informations. You can get an idea about its...
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INSIGHT has written several tools for Paolo Cignoni's Meshlab; these tools are meant to help you render orthographic views of 3D models for archaeological publication by simplifying, segmenting, cleaning and rendering 3D meshes. Meshlab Tools for Epigraphers These tools are meant to help you render orthographic views of 3D models for archaeological publication by simplifying, segmenting, cleaning and rendering 3D meshes. Before producing final plates for publication from 3D models, we find it...
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gargammel is an ancient DNA simulator gargammel: simulations of ancient DNA datasets gargammel is a set of programs aimed at simulating ancient DNA fragments. For ancient hominin samplesour program can also simulate various levels of present-day human contamination and microbial contamination. The website for gargammel can be found here: https://grenaud.github.io/gargammel/ Questions/bug report/feature requests : If you have Github account, consider creating an issue, you will help others who...
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R package to simulate a Luminescence Reader To restore the repository download the bundle wget https://archive.org/download/github.com-dstreble-LumReader_-_2017-01-26_13-55-17/dstreble-LumReader_-_2017-01-26_13-55-17.bundle and run: git clone dstreble-LumReader_-_2017-01-26_13-55-17.bundle Source: https://github.com/dstreble/LumReader Uploader: dstreble Upload date: 2017-01-26
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R package for tidy radiocarbon data c14 c14 provides basic classes and functions for radiocarbon data in R.It makes it easier to combine methods from several existing packages(e.g. rcarbon, Bchron, oxcAAR, c14bazAAR, ArchaeoPhases, stratigraphr)together and work with them in a tidy data workflow. It was forked from stratigraphr v0.3.0. Installation You can install the development version of c14 from GitHub: ``` r install.packages("devtools")...
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http://orbis.stanford.edu data as an R package rorbium http://orbis.stanford.edu data as an R package. Very little here yet. The source of the nodes and edges is http://github.com/sfsheath/gorbit . See that repository for links to Orbis related pages as ultimate source. To restore the repository download the bundle wget https://archive.org/download/github.com-sfsheath-rorbium_-_2014-12-25_21-10-56/sfsheath-rorbium_-_2014-12-25_21-10-56.bundle and run: git clone...
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This R Function creates a simple Ford diagram for archaeological seriation with error bars determined based on sample size where count data are given. Ford-Diagram This R Function creates a simple Ford diagram for archaeological seriation with error bars determined based on sample size where count data are given. To restore the repository download the bundle wget...
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Analogue and weighted averaging methods for palaeoecology analogue Released version Build status | Linux | Windows | Codecov || ----- | ------- | ------- || | | | What is analogue? analogue is an R package for use with palaeoecological data. Originally, analogue was intended as an R implementation of analogue methods such as analogue matching, ROC curves, and MAT transfer function models, and the computation of dissimilarity coefficients. Since then the scope of the package has grown to include...
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The ARK v1.1.2 Stable Release ARK 1.1.2 Stable Release This repository is a copy of the ARK v1.1.2 tarball that can be downloaded from the ARK website at http://ark.lparchaeology.com/. Please visit this site for more information and installation instructions. About ARK ARK (The Archaeological Recording Kit) is a web-based ‘toolkit’ for the collection, storage and dissemination of archaeological data. It includes data-editing, data-creation, data-viewing and data-sharing tools, all of which...
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Largest Empty Circles after Andreas Zimmermann Largest Empty Circles (LEC) after Zimmermann and Wendt. Tool for calculating the largest empty circles and estimation of archaeological sites theoretically to be expected in region of interest. This package is an implementation of the method published by Andreas Zimmermann and Karl Peter Wendt (Zimmermann/Wendt 2003). Method to do Installation if(!require('devtools')) install.packages('devtools')devtools::install_github("ISAAKiel/lecAAR")...
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Tasks for Excavations in AutoCAD ArchJobCAD This repository comprises three LISP-functions for repeated tasks in archaeological excavations. The aims are efficient work and a homogeneous structure for easy retrieval. This is achieved with standardised named layers for filtering and the extensive use of blocks with attributes including labels of features, finds and profiles. The detailed explanations are in German but the code includes German as well as English comments. The functions are:...
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QGIS plugin to transforms profile control points for fotogrammetric rectification from archaeological excavations. profileAAR A python PluginThe plugin profileAAR transforms profile control points for fotogrammetric rectification of profile images of archaeological excavations How to use profileAAR After installing and opening the plugin there is a "?"-Button in the Plugin. There you will find additional informations. QGIS 3 Install Qgis3 >3.6.0 You will find the Plugin in the...
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Floor plan app using augmented reality. Used for Heritage Structures Lab. ARFloorPlanApp Floor plan app using augmented reality. Used for Heritage Structures Lab.See the Developer Guide for full details. To restore the repository download the bundle wget https://archive.org/download/github.com-carlsun98-ARFloorPlanApp_-_2018-07-27_22-02-36/carlsun98-ARFloorPlanApp_-_2018-07-27_22-02-36.bundle and run: git clone carlsun98-ARFloorPlanApp_-_2018-07-27_22-02-36.bundle Source:...
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A repository of radiocarbon data for Rapa Nui rapanui-radiocarbon A repository of radiocarbon data for Rapa Nui This repository is intended to provide access to various tables of radiocarbon dates that exist for Rapa Nui. One challenge we have found in doing analyses of radiocarbon samples is that the data are often in tables as appendices but not included in an easy-to-share format (such as CSV). Thus when working on projects involving analyses of dates, one must painfully reenter the data. At...
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A comprehensive list of literature on Agent Based Models (ABM) in Archaeology. Maintained and created by Iza Romanowska and Lennart Linde. The-ABM-in-Archaeology-Bibliography A selected yet comprehensive list of literature and resources on Agent Based Models (ABM) in Archaeology. Maintained and created by Iza Romanowska and Lennart Linde. Know a missing resource or found a broken link? Put up a pull request ! Our very subjective list of must-reads Axtell, R. L., Epstein, J. M., Dean, J. S. Et...
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Radiocarbon Dating Resolution Calculator Res14C Radiocarbon Dating Resolution Calculator Overview A python implementation of the method of calculating radiocarbon dating resolution. For an overview of the method see: Svetlik, I., A. J. T. Jull, M. Molnár, P. P. Povinec, T. Kolář, P. Demján, K. Pachnerova Brabcova, et al. “The Best Possible Time Resolution: How Precise Could a Radiocarbon Dating Method Be?” Radiocarbon 61, no. 6 (December 2019): 1729–40....
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Shortcodes to describe inclusions in ceramic bodies To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-inclusions_-_2019-10-26_17-03-54/steko-inclusions_-_2019-10-26_17-03-54.bundle and run: git clone steko-inclusions_-_2019-10-26_17-03-54.bundle Source: https://codeberg.org/steko/inclusions Uploader: steko Upload date: 2019-10-26
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leastcostpath: Modelling Pathways and Movement Potential Within a Landscape leastcostpath - version 1.7.9 The R library leastcostpath provides the functionality to calculate Cost Surfaces based on multiple cost functions that approximate the difficulty of moving across a landscape. Furthermore, the attraction/repulsion of landscape features can be incorporated into the Cost Surfaces, as well as barriers that inhibit movement. NOTE: The R library leastcostpath requires the use of projected...
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open-archaeo
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Preparation of Object Dating Ranges for Density Plots datplot Converting date ranges into dating 'steps' eases the visualization of changes in e.g. pottery consumption, style and other variables over time. This package provides tools to process and prepare data for visualization. A rather common problem in archaeology is the fuzzyness of dates assigned to objects. If one wants to visualize overall changes in - let's say - pottery consumption, bar charts often fall short in that regard. If,...
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open-archaeo
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Interface for 14C-Database CalPal CalPal-Database CalPal 14C-Database created by Bernhard Weninger (Universität zu Köln) as part of the CalPal software package. This repository serves as an interface to access the data more easily. To restore the repository download the bundle wget https://archive.org/download/github.com-nevrome-CalPal-Database_-_2020-08-30_12-27-59/nevrome-CalPal-Database_-_2020-08-30_12-27-59.bundle and run: git clone nevrome-CalPal-Database_-_2020-08-30_12-27-59.bundle...
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open-archaeo
software

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Towards a data standard for paleoanthropology paleocore This is the codebase for the paleocore project. Note regarding settings.py: Local settings are stored in mysite/secrets.py. This file is not included in the GitHub repository for security reasons and must be created during installation. A template for secrets.py is provided at mysite/secrets_template.py. Add your local configuration settings and rename the file secrets.py. Python Environment Django==1.8.4 Pillow==3.0.0 Shapely==1.5.12...
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open-archaeo
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R package for interacting with the Paleocore API paleocoreR A demo of how to use this package is available here . To restore the repository download the bundle wget https://archive.org/download/github.com-paleocore-paleocoreR_-_2014-07-18_20-59-37/paleocore-paleocoreR_-_2014-07-18_20-59-37.bundle and run: git clone paleocore-paleocoreR_-_2014-07-18_20-59-37.bundle Source: https://github.com/paleocore/paleocoreR Uploader: paleocore Upload date: 2014-07-18
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open-archaeo
software

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Tidy tools for paleoenvironmental archives tidypaleo Working with multi-proxy paleo-archive data can be difficult. There aremultiple locations, multiple parameters, and a lot ofdiscipline-specific norms for plot layout and notation. This packagesimplifies a few workflows to promote the use of R for reproducibledocuments in paleo-based studies. Installation You can install tidypaleo from GitHub with: ``` r install.packages("remotes")...
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open-archaeo
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None paleoxrf The goal of paleoxrf is to simplify reading data from Acadia's paleoenvironmental X-Ray Fluorescence laboratory. Installation You can install paleoxrf from GitHub using the following code: ``` r install.packages("remotes") remotes::install_github("paleolimbot/paleoxrf")``` If all is well, you should be able to load the package: rlibrary(paleoxrf) The examples below use dplyr to manipulate the output of the read functions. rlibrary(dplyr) Reading XRF Data The...
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open-archaeo
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Data analysis tools for X-Ray, Neutron and Electron sciences MAILING LIST scikit-beam Documentation Examples scikit-beam-examples repository Powder calibration (still needs tilt correction) 1-time correlation dir Jupyter notebook Differential Phase Contrast dir Jupyter notebook Fast conversion to reciprocal space X-Ray Speckle Visibility Spectroscopy Basic Plotting of X-Ray Fluorescence Elemental Lines Quick start install with conda ```conda install scikit-beam -c nsls2forge ``` install...
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open-archaeo
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R package for the analysis of the fragmentation of archeological objects Archeofrag an R package for refitting and stratigraphic analysis in archeology Installation Archeofrag reference version can be installed from CRAN with: rinstall.packages("archeofrag") Alternatively, the development version, which includes the last changes and fixes, can be installed from GitHub with: ```r install.packages("devtools")...
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open-archaeo
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:art: Colour Schemes for Scientific Data Visualization khroma Overview Color blindness affects a large number of individuals. Whencommunicating scientific results colour palettes must therefore becarefully chosen to be accessible to all readers. This R package provides an implementation of Paul Tol[1] and Okabe andIto[2] colour schemes. These schemes are ready for each type of data(qualitative, diverging or sequential), with colours that are distinctfor all people, including colour-blind...
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open-archaeo
software

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Simple VueJS page generating fake laws of Hammurabi hammurabi-markov Project setup yarn install Compiles and hot-reloads for development yarn serve Compiles and minifies for production yarn build Lints and fixes files yarn lint Customize configuration See Configuration Reference . To restore the repository download the bundle wget https://archive.org/download/github.com-willismonroe-hammurabi-markov_-_2021-05-07_17-40-49/willismonroe-hammurabi-markov_-_2021-05-07_17-40-49.bundle and run: git...
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open-archaeo
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None Topographic network analysis for QGIS Terrain can be represented as a collection of objects - terrain features such as valleys, ridges, hills etc. One possible approach to arrive at such a model is modelling relationships between elements in a terrain model, most commonly pixels in an elevation model. Here, pixels are connected according to their height difference. Such a network, in it's simplest form identical to the one used for watershed modelling, can then be analysed for further...
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open-archaeo
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Tools for the post-processing of the Markov Chain simulated by any software used for the construction of archeological chronologies To restore the repository download the bundle wget https://archive.org/download/github.com-marieannevibet-ArchaeoPhases_-_2018-07-26_09-58-23/marieannevibet-ArchaeoPhases_-_2018-07-26_09-58-23.bundle and run: git clone marieannevibet-ArchaeoPhases_-_2018-07-26_09-58-23.bundle Source: https://github.com/marieannevibet/ArchaeoPhases Uploader: marieannevibet Upload...
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open-archaeo
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Infrastructure for Ordering using Seriation - R Package seriation - Infrastructure for Ordering Objects Using Seriation - R package This package provides the infrastructure for ordering objects with an implementation of several seriation /sequencing/ ordination techniques to reorder matrices, dissimilaritymatrices, and dendrograms (see below for a full list). Also provides (optimally) reordered heatmaps, color images and clustering visualizations like dissimilarity plots, andvisual assessment...
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open-archaeo
by stefanieschneider
software

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An Online Tool for the Comparative Analysis of Museum Databases MAX – Museum Analytics Overview In recent years, large museum databases have been created in the international museum sector that are awaiting meaningful use. They offer a hitherto unknown opportunity for empirical investigation of the history of collections, which can be expected to yield far-reaching results, especially in a comparative perspective. Museum Analytics , MAX , is intended to enable lecturers to import freely...
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open-archaeo
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Installer files for Cherish software Installer files for Cherish software Requirements Windows platform. Qt Installer Framework (can be installed through Qt Maintenance Tool). Installer generation First, make sure the packages contains the latest archive of the software distribution. Use archivegen to create and place the *.7z file, e.g.: archivegen.exe cheris.7z cherish_directory The archive file has to be placed in \packages\...\data folder. Second, once the cherish software is updated and...
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open-archaeo
software

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Scripts to create QR-Code images for storage boxes. Each box has an associated web page describing its content, and the QR-Code serves as a short-link from the physical object to the web page. To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-qrcode-storage_-_2020-06-22_14-11-12/steko-qrcode-storage_-_2020-06-22_14-11-12.bundle and run: git clone steko-qrcode-storage_-_2020-06-22_14-11-12.bundle Source: https://codeberg.org/steko/qrcode-storage...
Topics: Codeberg, code, software, git
open-archaeo
software

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Maya Calendar Tools Tools for converting between Maya and Western calendars. The Classic Maya developed the most sophisticated system for keeping track of time in the New World. In this app, you can convert dates from the Maya Calendar (Long Count and Calendar Round) to the Gregorian or Julian Calendars and vice-versa. You can also check the Maya glyphs for the current date. This is a React-Redux version of the Long Count tool in an older Vanilla app . Go to Web App To restore the repository...
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open-archaeo
software

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Compute postmortem damage patterns and decontaminate ancient genomes PMDtools Compute postmortem damage patterns and decontaminate ancient genomes. Description PMDtools computes ancient DNA damage patterns, and implements a likelihood framework incorporating postmortem damage (PMD), base quality scores and biological polymorphism to identify degraded DNA sequences that are unlikely to originate from modern contamination. Using the model, each sequence is assigned a PMD score, for which positive...
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open-archaeo
software

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A tool for creating and manipulating Harris Matrices, part of the Archaeological Recording Kit (ARK) by L ~ P : Archaeology ARK Matrix A tool for creating and manipulating Harris Matrices.Part of the Archaeological Recording Kit by L-P : Archaeology http://ark.lparchaeology.com NOTE: Primary development occurs on GitLab at https://gitlab.com/arklab/ArkMatrix . This repo is mirrored on GitHub for legacy links only. Features The following features are currently supported by the command line tool...
Topics: GitLab, code, software, git
open-archaeo
software

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Room Accumulation Simulation ro estimate archaeological population growth rates ReadMe.txt Documentation provided in RoomAccumDocumentation.pdf Licence provided in License.txt Source code RoomAccumXX.dpr Program Source Code KWKStdXE.pas Utility functions called by the program Compiled Windows version RoomAccumXX.exe
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open-archaeo
software

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A GNU Octave toolkit for analyzing diaphyseal long bone cross sectional geometry long-bone-diaphyseal-CSG-Toolkit A GNU Octave toolkit for analyzing diaphyseal long bone cross sectional geometry The present set of GNU Octave functions provides a novel and robust algorithm foranalyzing the diaphyseal cross-sectional geometric properties of long bones, whichcan be applied to any 3D digital model of a humerus, femur or tibia bone representedas a triangular mesh in a Wavefront OBJ file format. The...
Topics: GitHub, code, software, git